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Fund Holdings of RA CAPITAL MANAGEMENT LLC Filed on 2012-02-14

Link to Original SEC 13F filings sorted on filing date: 2012-02-14 | 2011-11-14 | 2011-08-15 | 2011-05-16 | 2011-02-14 | 2010-11-12 | 2010-08-16 | 2010-05-14 | 2010-02-16 | 2009-11-16 | 2009-08-13 | 2009-05-15 | 2009-02-17 | 2008-11-14 | 2008-08-13 | 2008-05-14 |

1. Fund Information

Fund NameRA CAPITAL MANAGEMENT LLC
Fund Manager
Address20 PARK PLAZA, SUITE 1200,
BOSTON, MA, 02116
::Google Map
Phone(617) 778-2500
13F Asset Last Qtr$114,167,000
13F Asset This Qtr$166,591,000
Asset Change45.92%

2. Comparison of Holdings by Sectors with Last Quarter

3. Top 20 Holdings (Value) of This Quarter

No.SecurityPut/CallStockSharesValue(x$1000)Activity(Shr)% Port.
1.)SEQUENOM, INC.SQNM4,619,800$20,558Added 75.19%12.34%
2.)INHIBITEX, INC.INHX1,248,067$13,654Cut -36.50%8.20%
3.)ARTHROCARE CORPORATIONARTC426,505$13,512Added 67.42%8.11%
4.)VANDA PHARMACEUTICALS INC.VNDA2,429,914$11,566Added 69.06%6.94%
5.)ENDOCYTE, INC.ECYT2,617,472$9,842Added 565.42%5.91%
6.)POZEN, INC.POZN2,437,315$9,627New5.78%
7.)ONCOGENEX PHARMACEUTICALS INC. - COMMON SHARESOGXI737,923$8,663Cut -4.22%5.20%
8.)COLUMBIA LABORATORIES, INC.CBRX3,410,573$8,526Cut -18.35%5.12%
9.)DYAX CORP.DYAX6,195,201$8,425New5.06%
10.)SYNAGEVA BIOPHARMA CORPORATIONGEVA314,302$8,370New5.02%
11.)DERMA SCIENCES INC COM PAR $.01DSCI1,043,419$7,909Added 31.05%4.75%
12.)INHIBITEX, INC.CALLINHX711,300$7,782New4.67%
13.)VENTRUS BIOSCIENCES INCVTUS869,923$6,966Added 23.31%4.18%
14.)SEQUENOM, INC.CALLSQNM1,500,000$6,675New4.01%
15.)ACADIA PHARMACEUTICALS INC.ACAD5,269,999$5,692Unchanged3.42%
16.)NEWLINK GENETICS CORP500,000$3,520New2.11%
17.)GENTIUM SPA - GENTIUM SPA AMERICAN DEPOSITARY SHARES (ADSS)GENT486,662$2,959Cut -20.35%1.78%
18.)SANGAMO BIOSCIENCES, INC.SGMO865,884$2,459New1.48%
19.)IDENIX PHARMACEUTICALS, INC.IDIX300,000$2,234New1.34%
20.)DYNAVAX TECHNOLOGIES CORPORATIONDVAX650,000$2,158New1.30%

4. Top 20 (Value) Holdings BOUGHT NEW in This Quarter

No.SecurityPut/CallStockShares NEWValue(x$1000)% Port.
1.)POZEN, INC.POZN2,437,315$9,6275.78%
2.)DYAX CORP.DYAX6,195,201$8,4255.06%
3.)SYNAGEVA BIOPHARMA CORPORATIONGEVA314,302$8,3705.02%
4.)INHIBITEX, INC.CALLINHX711,300$7,7824.67%
5.)SEQUENOM, INC.CALLSQNM1,500,000$6,6754.01%
6.)NEWLINK GENETICS CORP500,000$3,5202.11%
7.)SANGAMO BIOSCIENCES, INC.SGMO865,884$2,4591.48%
8.)IDENIX PHARMACEUTICALS, INC.IDIX300,000$2,2341.34%
9.)DYNAVAX TECHNOLOGIES CORPORATIONDVAX650,000$2,1581.30%
10.)MELA SCIENCES, INCMELA429,001$1,5830.95%
11.)NOVAVAX, INC.NVAX969,072$1,2210.73%
12.)REPLIGEN CORPORATIONRGEN253,206$8790.53%

5. Top 20 (Value) Holdings Totally SOLD OUT in This Quarter

No.SecurityPut/CallStockShares SOLDValue(x$1000)% Port. Last Qtr
1.)PHARMASSET, INC.VRUS69,600$5,7335.02%
2.)ALEXZA PHARMACEUTICALS, INC.ALXA3,905,653$4,2183.70%
3.)RAPTOR PHARMACEUTICAL CORP.RPTP900,000$4,0593.56%
4.)CARDIONET, INC.BEAT1,335,582$4,0073.51%
5.)TRIMERIS, INC.TRMS1,559,106$3,9293.44%
6.)ENZO BIOCHEM, INC.ENZ1,383,830$3,5563.12%
7.)ANACOR PHARMACEUTICALS, INC.ANAC462,100$2,6342.31%
8.)FURIEX PHARMACEUTICALS, INC.FURX146,101$2,0791.82%
9.)ANTHERA PHARMACEUTICALS, INC.ANTH368,807$1,7591.54%
10.)SYNTA PHARMACEUTICALS CORP.SNTA465,284$1,5121.32%
11.)TENGION INCTNGN1,060,070$5720.50%
12.)SUNESIS PHARMACEUTICALS, INC.SNSS414,793$5100.45%